Detailed information of SNP:
|
SNP ID:
sf0313991463(Gbrowse)
Chromosome: chr03 Position: 13991463 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.16% | 11.84% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 70.75% | 29.25% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313991463 | T->C | LOC_Os03g24550(LOC_Os03g24550.1) | INTRON |