Detailed information of SNP:
|
SNP ID:
sf0314015800(Gbrowse)
Chromosome: chr03 Position: 14015800 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.15% | 47.85% |
| All Indica | 799 | 83.85% | 16.15% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314015800 | C->A | LOC_Os03g24610(LOC_Os03g24610.1) | INTRON |