Detailed information of SNP:
|
SNP ID:
sf0314034319(Gbrowse)
Chromosome: chr03 Position: 14034319 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1261 | 91.28% | 8.72% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 343 | 71.72% | 28.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 238 | 86.13% | 13.87% |
| Tropical Japonica | 63 | 28.57% | 71.43% |
| Japonica Intermediate | 42 | 54.76% | 45.24% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314034319 | T->A | LOC_Os03g24640(LOC_Os03g24640.1) | INTRON |