Detailed information of SNP:
|
SNP ID:
sf0314060157(Gbrowse)
Chromosome: chr03 Position: 14060157 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 95.50% | 4.50% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 459 | 86.71% | 13.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 80.13% | 19.87% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314060157 | A->G | LOC_Os03g24680(LOC_Os03g24680.1) | INTRON |