Detailed information of SNP:
|
SNP ID:
sf0314086984(Gbrowse)
Chromosome: chr03 Position: 14086984 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 95.74% | 4.26% |
| All Indica | 742 | 93.13% | 6.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 359 | 95.82% | 4.18% |
| Indica II | 200 | 90.50% | 9.50% |
| Indica Intermediate | 183 | 90.71% | 9.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314086984 | A->G | LOC_Os03g24710(LOC_Os03g24710.1) | INTRON |