Detailed information of SNP:
|
SNP ID:
sf0314105798(Gbrowse)
Chromosome: chr03 Position: 14105798 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 98.40% | 1.60% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 459 | 95.42% | 4.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 69 | 73.91% | 26.09% |
| Japonica Intermediate | 59 | 94.92% | 5.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314105798 | T->C | INTERGENIC | None |