Detailed information of SNP:
|
SNP ID:
sf0314123190(Gbrowse)
Chromosome: chr03 Position: 14123190 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 94.61% | 5.39% |
| All Indica | 774 | 90.70% | 9.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 364 | 91.48% | 8.52% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 201 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314123190 | C->G | LOC_Os03g24780(LOC_Os03g24780.1) | Non-Synonymous SNP |