Detailed information of SNP:
|
SNP ID:
sf0314123890(Gbrowse)
Chromosome: chr03 Position: 14123890 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 50.22% | 49.78% |
| All Indica | 767 | 78.62% | 21.38% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 354 | 67.51% | 32.49% |
| Indica II | 206 | 85.44% | 14.56% |
| Indica Intermediate | 207 | 90.82% | 9.18% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314123890 | T->C | LOC_Os03g24780(LOC_Os03g24780.1) | Synonymous |