Detailed information of SNP:
|
SNP ID:
sf0314126356(Gbrowse)
Chromosome: chr03 Position: 14126356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 51.32% | 48.68% |
| All Indica | 782 | 24.81% | 75.19% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 369 | 39.57% | 60.43% |
| Indica II | 210 | 14.76% | 85.24% |
| Indica Intermediate | 203 | 8.37% | 91.63% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314126356 | C->T | LOC_Os03g24790(LOC_Os03g24790.1) | Non-Synonymous SNP |