Detailed information of SNP:
|
SNP ID:
sf0314126971(Gbrowse)
Chromosome: chr03 Position: 14126971 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 92.70% | 7.30% |
| All Indica | 727 | 89.27% | 10.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 53 | 79.25% | 20.75% |
| Indica I | 341 | 90.32% | 9.68% |
| Indica II | 194 | 88.14% | 11.86% |
| Indica Intermediate | 192 | 88.54% | 11.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314126971 | G->A | LOC_Os03g24790(LOC_Os03g24790.1) | Non-Synonymous SNP |