Detailed information of SNP:
|
SNP ID:
sf0314127346(Gbrowse)
Chromosome: chr03 Position: 14127346 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 58.56% | 41.44% |
| All Indica | 787 | 37.23% | 62.77% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 367 | 53.68% | 46.32% |
| Indica II | 213 | 26.29% | 73.71% |
| Indica Intermediate | 207 | 19.32% | 80.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314127346 | A->G | INTERGENIC | None |