Detailed information of SNP:
|
SNP ID:
sf0314127397(Gbrowse)
Chromosome: chr03 Position: 14127397 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 59.51% | 40.49% |
| All Indica | 785 | 37.58% | 62.42% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 58 | 8.62% | 91.38% |
| Indica I | 365 | 54.25% | 45.75% |
| Indica II | 212 | 26.89% | 73.11% |
| Indica Intermediate | 208 | 19.23% | 80.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314127397 | G->C | INTERGENIC | None |