Detailed information of SNP:
|
SNP ID:
sf0314128896(Gbrowse)
Chromosome: chr03 Position: 14128896 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 52.11% | 47.89% |
| All Indica | 757 | 25.89% | 74.11% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 345 | 38.84% | 61.16% |
| Indica II | 209 | 18.66% | 81.34% |
| Indica Intermediate | 203 | 11.33% | 88.67% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314128896 | G->C | LOC_Os03g24800(LOC_Os03g24800.1) | Non-Synonymous SNP |