Detailed information of SNP:
|
SNP ID:
sf0314129872(Gbrowse)
Chromosome: chr03 Position: 14129872 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 56.87% | 43.13% |
| All Indica | 763 | 34.08% | 65.92% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 353 | 48.16% | 51.84% |
| Indica II | 209 | 23.92% | 76.08% |
| Indica Intermediate | 201 | 19.90% | 80.10% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314129872 | T->C | LOC_Os03g24800(LOC_Os03g24800.1) | Non-Synonymous SNP |