Detailed information of SNP:
|
SNP ID:
sf0314129969(Gbrowse)
Chromosome: chr03 Position: 14129969 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 55.87% | 44.13% |
| All Indica | 763 | 32.50% | 67.50% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 354 | 44.92% | 55.08% |
| Indica II | 206 | 24.27% | 75.73% |
| Indica Intermediate | 203 | 19.21% | 80.79% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314129969 | A->G | LOC_Os03g24800(LOC_Os03g24800.1) | INTRON |