Detailed information of SNP:
|
SNP ID:
sf0314202351(Gbrowse)
Chromosome: chr03 Position: 14202351 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1333 | 96.17% | 3.83% |
| All Indica | 720 | 93.19% | 6.81% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 347 | 88.47% | 11.53% |
| Indica II | 191 | 97.91% | 2.09% |
| Indica Intermediate | 182 | 97.25% | 2.75% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314202351 | A->C | INTERGENIC | None |