Detailed information of SNP:
|
SNP ID:
sf0314210235(Gbrowse)
Chromosome: chr03 Position: 14210235 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1315 | 92.70% | 7.30% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 396 | 77.53% | 22.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 260 | 95.00% | 5.00% |
| Tropical Japonica | 83 | 33.73% | 66.27% |
| Japonica Intermediate | 53 | 60.38% | 39.62% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314210235 | T->C | INTERGENIC | None |