Detailed information of SNP:
|
SNP ID:
sf0314220927(Gbrowse)
Chromosome: chr03 Position: 14220927 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.22% | 46.78% |
| All Indica | 794 | 29.47% | 70.53% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 30.56% | 69.44% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 208 | 42.79% | 57.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314220927 | T->C | INTERGENIC | None |