Detailed information of SNP:
|
SNP ID:
sf0314261370(Gbrowse)
Chromosome: chr03 Position: 14261370 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.01% | 42.99% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314261370 | C->T | INTERGENIC | None |