Detailed information of SNP:
|
SNP ID:
sf0314309660(Gbrowse)
Chromosome: chr03 Position: 14309660 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.04% | 44.96% |
| All Indica | 799 | 30.04% | 69.96% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 37.60% | 62.40% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 211 | 10.43% | 89.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314309660 | C->A | INTERGENIC | None |