Detailed information of SNP:
|
SNP ID:
sf0314332038(Gbrowse)
Chromosome: chr03 Position: 14332038 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1241 | 83.40% | 16.60% |
| All Indica | 638 | 94.83% | 5.17% |
| All Japonica | 497 | 66.00% | 34.00% |
| Aus | 53 | 98.11% | 1.89% |
| Indica I | 276 | 89.86% | 10.14% |
| Indica II | 184 | 98.37% | 1.63% |
| Indica Intermediate | 178 | 98.88% | 1.12% |
| Temperate Japonica | 335 | 52.24% | 47.76% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314332038 | G->A | LOC_Os03g25100(LOC_Os03g25100.1) | Synonymous |