Detailed information of SNP:
|
SNP ID:
sf0314343189(Gbrowse)
Chromosome: chr03 Position: 14343189 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.82% | 44.18% |
| All Indica | 797 | 27.60% | 72.40% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 35.20% | 64.80% |
| Indica II | 211 | 35.55% | 64.45% |
| Indica Intermediate | 211 | 6.16% | 93.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314343189 | T->A | LOC_Os03g25120(LOC_Os03g25120.1) | INTRON |