Detailed information of SNP:
|
SNP ID:
sf0314381580(Gbrowse)
Chromosome: chr03 Position: 14381580 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.93% | 35.07% |
| All Indica | 797 | 42.79% | 57.21% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 212 | 42.92% | 57.08% |
| Indica Intermediate | 210 | 29.05% | 70.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314381580 | C->T | LOC_Os03g25150(LOC_Os03g25150.1) | Synonymous |