Detailed information of SNP:
|
SNP ID:
sf0314389397(Gbrowse)
Chromosome: chr03 Position: 14389397 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 63.71% | 36.29% |
| All Indica | 780 | 40.26% | 59.74% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 367 | 49.05% | 50.95% |
| Indica II | 210 | 40.95% | 59.05% |
| Indica Intermediate | 203 | 23.65% | 76.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314389397 | C->T | INTERGENIC | None |