Detailed information of SNP:
|
SNP ID:
sf0314395039(Gbrowse)
Chromosome: chr03 Position: 14395039 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 59.57% | 40.43% |
| All Indica | 770 | 32.73% | 67.27% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 360 | 40.00% | 60.00% |
| Indica II | 210 | 38.57% | 61.43% |
| Indica Intermediate | 200 | 13.50% | 86.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314395039 | A->C | INTERGENIC | None |