Detailed information of SNP:
|
SNP ID:
sf0314413914(Gbrowse)
Chromosome: chr03 Position: 14413914 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 52.68% | 47.32% |
| All Indica | 797 | 57.59% | 42.41% |
| All Japonica | 448 | 39.29% | 60.71% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 375 | 49.60% | 50.40% |
| Indica II | 211 | 57.35% | 42.65% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 308 | 27.60% | 72.40% |
| Tropical Japonica | 81 | 72.84% | 27.16% |
| Japonica Intermediate | 59 | 54.24% | 45.76% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314413914 | T->G | INTERGENIC | None |