Detailed information of SNP:
|
SNP ID:
sf0314421318(Gbrowse)
Chromosome: chr03 Position: 14421318 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.77% | 48.23% |
| All Indica | 798 | 86.47% | 13.53% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314421318 | T->A | INTERGENIC | None |