Detailed information of SNP:
|
SNP ID:
sf0314421364(Gbrowse)
Chromosome: chr03 Position: 14421364 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.94% | 48.06% |
| All Indica | 798 | 86.59% | 13.41% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314421364 | T->C | INTERGENIC | None |