Detailed information of SNP:
|
SNP ID:
sf0314424231(Gbrowse)
Chromosome: chr03 Position: 14424231 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 61.62% | 38.38% |
| All Indica | 792 | 82.95% | 17.05% |
| All Japonica | 497 | 34.21% | 65.79% |
| Aus | 63 | 33.33% | 66.67% |
| Indica I | 372 | 79.57% | 20.43% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 209 | 76.08% | 23.92% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314424231 | A->G | LOC_Os03g25260(LOC_Os03g25260.1) | INTRON |