Detailed information of SNP:
|
SNP ID:
sf0314424799(Gbrowse)
Chromosome: chr03 Position: 14424799 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 50.21% | 49.79% |
| All Indica | 789 | 16.35% | 83.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 370 | 19.19% | 80.81% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 206 | 22.82% | 77.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314424799 | G->T | LOC_Os03g25260(LOC_Os03g25260.1) | INTRON |