Detailed information of SNP:
|
SNP ID:
sf0314429304(Gbrowse)
Chromosome: chr03 Position: 14429304 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 87.27% | 12.73% |
| All Indica | 760 | 79.21% | 20.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 76.19% | 23.81% |
| Indica I | 351 | 74.36% | 25.64% |
| Indica II | 203 | 73.40% | 26.60% |
| Indica Intermediate | 206 | 93.20% | 6.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314429304 | C->T | INTERGENIC | None |