Detailed information of SNP:
|
SNP ID:
sf0314430150(Gbrowse)
Chromosome: chr03 Position: 14430150 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 89.41% | 10.59% |
| All Indica | 797 | 84.82% | 15.18% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 374 | 80.75% | 19.25% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314430150 | A->C | INTERGENIC | None |