Detailed information of SNP:
|
SNP ID:
sf0314447614(Gbrowse)
Chromosome: chr03 Position: 14447614 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.73% | 39.27% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314447614 | C->T | LOC_Os03g25310(LOC_Os03g25310.1) | Non-Synonymous SNP |