Detailed information of SNP:
|
SNP ID:
sf0314487093(Gbrowse)
Chromosome: chr03 Position: 14487093 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 64.15% | 35.85% |
| All Indica | 797 | 65.12% | 34.88% |
| All Japonica | 497 | 60.56% | 39.44% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 373 | 54.42% | 45.58% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 44.48% | 55.52% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314487093 | G->A | INTERGENIC | None |