Detailed information of SNP:
|
SNP ID:
sf0314489926(Gbrowse)
Chromosome: chr03 Position: 14489926 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.04% | 46.96% |
| All Indica | 798 | 45.49% | 54.51% |
| All Japonica | 496 | 60.69% | 39.31% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 42.40% | 57.60% |
| Indica II | 212 | 70.75% | 29.25% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 334 | 44.61% | 55.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314489926 | C->A | INTERGENIC | None |