Detailed information of SNP:
|
SNP ID:
sf0314496661(Gbrowse)
Chromosome: chr03 Position: 14496661 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 96.82% | 3.18% |
| All Indica | 772 | 95.08% | 4.92% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 191 | 91.62% | 8.38% |
| Indica Intermediate | 206 | 98.54% | 1.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314496661 | T->G | INTERGENIC | None |