Detailed information of SNP:
|
SNP ID:
sf0314501179(Gbrowse)
Chromosome: chr03 Position: 14501179 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.44% | 48.56% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314501179 | A->T | LOC_Os03g25364(LOC_Os03g25364.1) | Non-Synonymous SNP |