Detailed information of SNP:
|
SNP ID:
sf0314507354(Gbrowse)
Chromosome: chr03 Position: 14507354 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 78.87% | 21.13% |
| All Indica | 790 | 97.34% | 2.66% |
| All Japonica | 453 | 51.88% | 48.12% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 326 | 67.48% | 32.52% |
| Tropical Japonica | 70 | 5.71% | 94.29% |
| Japonica Intermediate | 57 | 19.30% | 80.70% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 35 | 65.71% | 34.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314507354 | G->A | INTERGENIC | None |