Detailed information of SNP:
|
SNP ID:
sf0314510720(Gbrowse)
Chromosome: chr03 Position: 14510720 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.46% | 22.54% |
| All Indica | 795 | 63.27% | 36.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 52.94% | 47.06% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 208 | 79.81% | 20.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314510720 | C->A | INTERGENIC | None |