Detailed information of SNP:
|
SNP ID:
sf0314513194(Gbrowse)
Chromosome: chr03 Position: 14513194 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 71.16% | 28.84% |
| All Indica | 798 | 52.26% | 47.74% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 42.93% | 57.07% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314513194 | G->A | LOC_Os03g25390(LOC_Os03g25390.1) | Synonymous |
| sf0314513194 | G->A | LOC_Os03g25390(LOC_Os03g25390.2) | Synonymous |
| sf0314513194 | G->A | LOC_Os03g25390(LOC_Os03g25390.3) | UTR_3_PRIME |
| sf0314513194 | G->A | LOC_Os03g25380(LOC_Os03g25380.1) | UTR_3_PRIME |