Detailed information of SNP:
|
SNP ID:
sf0314519885(Gbrowse)
Chromosome: chr03 Position: 14519885 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 81.45% | 18.55% |
| All Indica | 798 | 70.05% | 29.95% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 60.70% | 39.30% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314519885 | C->T | LOC_Os03g25394(LOC_Os03g25394.1) | INTRON |