Detailed information of SNP:
|
SNP ID:
sf0314532235(Gbrowse)
Chromosome: chr03 Position: 14532235 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 62.57% | 37.43% |
| All Indica | 799 | 41.55% | 58.45% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 46.13% | 53.87% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314532235 | T->G | INTERGENIC | None |