Detailed information of SNP:
|
SNP ID:
sf0314541258(Gbrowse)
Chromosome: chr03 Position: 14541258 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.65% | 45.35% |
| All Indica | 799 | 41.68% | 58.32% |
| All Japonica | 496 | 78.43% | 21.57% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 44.53% | 55.47% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 52.61% | 47.39% |
| Temperate Japonica | 334 | 77.84% | 22.16% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314541258 | A->C | LOC_Os03g25434(LOC_Os03g25434.1) | INTRON |