Detailed information of SNP:
|
SNP ID:
sf0314542742(Gbrowse)
Chromosome: chr03 Position: 14542742 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 79.69% | 20.31% |
| All Indica | 798 | 82.71% | 17.29% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 77.61% | 22.39% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314542742 | T->C | LOC_Os03g25440(LOC_Os03g25440.1) | Non-Synonymous SNP |