Detailed information of SNP:
|
SNP ID:
sf0314556038(Gbrowse)
Chromosome: chr03 Position: 14556038 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 62.51% | 37.49% |
| All Indica | 799 | 41.93% | 58.07% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 44.80% | 55.20% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314556038 | A->G | INTERGENIC | None |