Detailed information of SNP:
|
SNP ID:
sf0314557726(Gbrowse)
Chromosome: chr03 Position: 14557726 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 65.22% | 34.78% |
| All Indica | 740 | 45.14% | 54.86% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 353 | 47.31% | 52.69% |
| Indica II | 206 | 27.18% | 72.82% |
| Indica Intermediate | 181 | 61.33% | 38.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314557726 | C->T | INTERGENIC | None |