Detailed information of SNP:
|
SNP ID:
sf0314566764(Gbrowse)
Chromosome: chr03 Position: 14566764 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1280 | 79.30% | 20.70% |
| All Indica | 667 | 63.57% | 36.43% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 299 | 70.90% | 29.10% |
| Indica II | 188 | 36.17% | 63.83% |
| Indica Intermediate | 180 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314566764 | T->A | LOC_Os03g25500(LOC_Os03g25500.1) | INTRON |