Detailed information of SNP:
|
SNP ID:
sf0314570406(Gbrowse)
Chromosome: chr03 Position: 14570406 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.02% | 37.98% |
| All Indica | 799 | 41.18% | 58.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 44.80% | 55.20% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314570406 | G->A | LOC_Os03g25500(LOC_Os03g25500.1) | UTR_3_PRIME |