Detailed information of SNP:
|
SNP ID:
sf0314572346(Gbrowse)
Chromosome: chr03 Position: 14572346 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 82.13% | 17.87% |
| All Indica | 756 | 69.05% | 30.95% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 354 | 62.99% | 37.01% |
| Indica II | 203 | 83.74% | 16.26% |
| Indica Intermediate | 199 | 64.82% | 35.18% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314572346 | C->T | INTERGENIC | None |