Detailed information of SNP:
|
SNP ID:
sf0314574627(Gbrowse)
Chromosome: chr03 Position: 14574627 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 89.95% | 10.05% |
| All Indica | 718 | 83.29% | 16.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 338 | 85.50% | 14.50% |
| Indica II | 178 | 69.10% | 30.90% |
| Indica Intermediate | 202 | 92.08% | 7.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314574627 | C->T | INTERGENIC | None |